This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
User:Alexander Berchansky
From Proteopedia
(Difference between revisions)
| Line 90: | Line 90: | ||
*[[Cytochrome c]] | *[[Cytochrome c]] | ||
*[[Methotrexate]] | *[[Methotrexate]] | ||
| + | *[[Kemp elimination catalyst]] | ||
*[[Urease]] | *[[Urease]] | ||
*[[Phosphoglycerate Kinase]] | *[[Phosphoglycerate Kinase]] | ||
| + | *[[Plant-derived glucocerebrosidase]] | ||
*[[NADH quinone oxidoreductase (NQO1) with inhibitor dicoumarol]] | *[[NADH quinone oxidoreductase (NQO1) with inhibitor dicoumarol]] | ||
*[[Matrix metalloproteinase]] | *[[Matrix metalloproteinase]] | ||
*[[Amino acid oxidase]] | *[[Amino acid oxidase]] | ||
| + | *[[Mutant immunity protein 9 (variant R12-13)]] | ||
*[[Acetylcholine binding protein]] | *[[Acetylcholine binding protein]] | ||
*[[Hydroxylase]] | *[[Hydroxylase]] | ||
*[[Actin]] | *[[Actin]] | ||
| + | *[[Torpedo Californica Acetylcholinesterase in complex with an (R)-Tacrine-(10)-Hupyridone inhibitor]] | ||
*[[Dronpa]] | *[[Dronpa]] | ||
*[[Major histocompatibility complex]] | *[[Major histocompatibility complex]] | ||
| + | *[[Mutant immunity protein 9 (variant R12-2)]] | ||
*[[Butyrylcholinesterase]] | *[[Butyrylcholinesterase]] | ||
*[[Human acid-beta-glucosidase covalently bound to conduritol B epoxide]] | *[[Human acid-beta-glucosidase covalently bound to conduritol B epoxide]] | ||
*[[Avidin]] | *[[Avidin]] | ||
*[[Human Acetylcholinesterase]] | *[[Human Acetylcholinesterase]] | ||
| + | *[[FK506 binding protein]] | ||
*[[Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis]] | *[[Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis]] | ||
*[[Catalase]] | *[[Catalase]] | ||
| Line 126: | Line 132: | ||
*[[Dihydrodipicolinate synthase]] | *[[Dihydrodipicolinate synthase]] | ||
*[[Directed evolution]] | *[[Directed evolution]] | ||
| + | *[[Colicin Immunity Protein]] | ||
| + | *[[Human FKBP52]] | ||
Revision as of 14:07, 8 July 2018
Dr. Alexander Berchansky, Ph.D., Israel Structural Proteomics Center, Weizmann Institute of Science
Interesting pages:
- Acetylcholinesterase
- AChE inhibitors and substrates
- Mutations in BRCA1/BARD1 RING-domain heterodimer
- Mutations in Brca1 BRCT Domains
- Missense Mutations in Phenylalanine Hydroxylase
- A hydrogen-bonding network formed by the B10-E7-E11 residues of a truncated hemoglobin from Tetrahymena pyriformis is critical for stability of bound oxygen and nitric oxide detoxification
- Phosphofructokinase (PFK)
- Alcohol dehydrogenase
- Beta-glucosidase
- Flexibility of the flap in the active site of BACE1 as revealed by crystal structures and molecular dynamics simulations
- A DNA structural alphabet provides new insight into DNA flexibility
- Crystal structure of ADL1, a plant-specific homologue of the universal diaminopimelate amino transferase enzyme of lysine biosynthesis
- Structure of recombinant human carboxylesterase 1 isolated from whole cabbage looper larvae
- Fine tuning of chlorophyll spectra by protein-induced ring deformation
- Xanthine dehydrogenase
- N-Butylisocyanide Oxidation at the [NiFe4S4OHx]-cluster of CO Dehydrogenase
- Multifaceted SlyD from Helicobacter pylori: implication in [NiFe] hydrogenase maturation
- Potent Inhibition of Dinuclear Zinc(II) Peptidase, an Aminopeptidase from Aeromonas proteolytica, by 8-Quinolinol Derivatives: Inhibitor Design Based on Zn2+ Fluorophores, Kinetic, and X-ray Crystallographic Study
- Laue Crystal Structure of Shewanella oneidensis Cytochrome c Nitrite Reductase from a High-yield Expression System
- Peptidylglycine α-Hydroxylating Monooxygenase (PHM)-coordination of peroxide to CuM center. Structural and computational study
- Solution structure and dynamics of human S100A14
- The crystal structure of Sporosarcina pasteurii urease in a complex with citrate provides new hints for inhibitor design
- The mechanism of copper uptake by tyrosinase from Bacillus megaterium
- The crystal structure of an extracellular catechol oxidase from the ascomycete fungus Aspergillus oryzae
- Selectivity of Ni(II) and Zn(II) binding to Sporosarcina pasteurii UreE, a metallo-chaperone in the urease assembly: a calorimetric and crystallographic study
- Solution structure and metal ion binding sites of the human CPEB3 ribozyme's P4 domain
- Synthesis, characterization and binding properties towards CT-DNA and Lipoxygenase, of mixed ligand silver(I) complexes with 2-mercapto-thiazole and its derivatives and triphenylphosphine.
- Fluoride inhibition of Sporosarcina pasteurii urease: structure and thermodynamics
- Aromatic aldehydes at the active site of Aldehyde Oxidoreductase from Desulfovibrio gigas: Reactivity and Molecular Details of the Enzyme-Substrate and Enzyme-Product Interactions
- Crystallographic studies of [NiFe]-hydrogenase mutants: towards consensus structures for the elusive unready oxidized states
- High-resolution crystal structure of Z-DNA in complex with Cr3+ cations
- Structural Characterization of Metal Binding to a Cold-adapted Frataxin
- Conformational control of the binding of diatomic gases to cytochrome c’
- Analyzing the Catalytic Role of Active Site Residues in the Fe-Type Nitrile Hydratase from Comamonas testosteroni Ni1
- Structural characterization of zinc-bound Zmp1, a zinc-dependent metalloprotease secreted by Clostridium difficile
- Structural evidence for Arabidopsis glutathione transferase AtGSTF2 functioning as a transporter of small organic ligands
- Crystal structure of porcine pancreatic phospholipase A2 in complex with 2-methoxycyclohexa-2-5-diene-1,4-dione
- A DNA Structural Alphabet Distinguishes Structural Features of DNA Bound to Regulatory Proteins and in the Nucleosome Core Particle
- Structural and kinetic studies of imidazole binding to two members of the cytochrome c6 family reveal an important role for a conserved heme pocket residue
- Protein and metal cluster structure of the wheat metallothionein domain γ-Ec-1. The second part of the puzzle.
- Ferredoxin
- A Cryo-Crystallographic Time Course for Peroxide Reduction by Rubrerythrin from Pyrococcus furiosus
- Cyt1Aa Toxin: High Resolution Structure Reveals Implications for its Membrane-Perforating Function
- Catalytic metal ion rearrangements underline promiscuity and evolvability of a metalloenzyme
- Structure of estradiol metal chelate and estrogen receptor complex: The basis for designing a new class of SERMs
- Structural and functional insights into a dodecameric molecular machine – The RuvBL1/RuvBL2 complex
- Automated computational design of human enzymes for high bacterial expression and stability
- Antiviral Activity of 3(2H)- and 6-Chloro-3(2H)-Isoflavenes against Highly Diverged, Neurovirulent Vaccine-Derived, Type2 Poliovirus Sewage Isolates
- Structural Basis of Enzymatic Activity for the Ferulic Acid Decarboxylase (FADase) from Enterobacter sp. Px6-4
- Structural and functional characterization of the interaction of the photosensitizing probe methylene blue with Torpedo californica acetylcholinesterase
- The Impact of Crystallization Conditions on Structure-Based Drug Design: a Case Study on the Methylene Blue/Acetylcholinesterase Complex
- Structural basis of transcription activation
- Promiscuous Protein Binding as a Function of Protein Stability
- An Insight to the Dynamics of Conserved Water Mediated Salt Bridge Interaction and Inter-Domain Recognition in hIMPDH Isoforms
- Elucidation by NMR solution of neurotensin in Small Unilamellar Vesicle environment: molecular surveys for neurotensin receptor recognition
- Dominant-negative Effects in Prion Diseases: Insights from Molecular Dynamics Simulations on Mouse Prion Protein Chimeras
- Influence of divalent magnesium ion on DNA: molecular dynamics simulation studies
- Evidence-based docking of the urease activation complex
- Carbon monoxide binding to the heme group at the dimeric interface modulates structure and copper accessibility in the Cu,Zn superoxide dismutase from Haemophilus ducreyi: in silico and in vitro evidences
- Para-(benzoyl)-phenylalanine as a potential inhibitor against LpxC of Leptospira spp.: Homology modeling, docking and molecular dynamics study
- Drug resistance mechanism of PncA in Mycobacterium Tuberculosis
- Mechanism of BAG1 repair on Parkinson’s disease-linked DJ1 mutation
- Traditional Chinese medicine as dual guardians against hypertension and cancer?
- The molecular origin of the MMR-dependent apoptosis pathway from dynamics analysis of MutSα-DNA complexes
- The extracellular subunit interface of the 5-HT3 receptors: a computational alanine scanning mutagenesis study
- DNA Conformation and Energy in Nucleosome Core: A Theoretical Approach
- Molecular modeling study for conformational changes of Sirtuin 2 due to substrate and inhibitor binding
- Crystal structure of the CN-hydrolase SA0302 from the pathogenic bacterium Staphylococcus aureus belonging to the Nit and NitFhit Branch of the nitrilase superfamily
- Insight into TPMT*23 Mutation Mis-folding Using Molecular Dynamics Simulation and Protein Structure Analysis
- Identification of structural motifs in the E2 glycoprotein of Chikungunya involved in virus - host interaction
- Molecular dynamics simulations of the thermal stability of tteRBP and ecRBP
- Investigation on the Site-Selective Binding of Bovine Serum Albumin by Erlotinib Hydrochloride
- Interhelical loops within the bHLH domain are determinant in maintaining TWIST1-DNA complexes
- Investigation of Silent Information Regulator 1 (Sirt1) Agonists from Traditional Chinese Medicine
- Han ethnicity-specific type 2 diabetic treatment from traditional Chinese medicine?
- Conformational dynamics of full-length inducible human Hsp70 derived from microsecond molecular dynamics simulations in explicit solvent
- Non-specificity and synergy at the binding site of the carboplatin-induced DNA adduct via molecular dynamics simulations of the MutSα-DNA recognition complex
- A Possible Strategy against Head and Neck Cancer: In Silico. Investigation of Three-in-One inhibitors
- Structural Insights into the South African HIV-1 Subtype C Protease: Impact of hinge region dynamics and flap flexibility in drug resistance
- Memory-Enhancement by Traditional Chinese Medicine?
- The remarkable efficiency of a Pin-II proteinase inhibitor sans two conserved disulfide bonds is due to enhanced flexibility and hydrogen-bond density in the reactive loop
- Traditional Chinese medicine application in HIV: An in silico study
- Molecular Mechanism of HIV-1 gp120 Mutations That Reduce CD4 Binding Affinity
- Cytochrome c
- Methotrexate
- Kemp elimination catalyst
- Urease
- Phosphoglycerate Kinase
- Plant-derived glucocerebrosidase
- NADH quinone oxidoreductase (NQO1) with inhibitor dicoumarol
- Matrix metalloproteinase
- Amino acid oxidase
- Mutant immunity protein 9 (variant R12-13)
- Acetylcholine binding protein
- Hydroxylase
- Actin
- Torpedo Californica Acetylcholinesterase in complex with an (R)-Tacrine-(10)-Hupyridone inhibitor
- Dronpa
- Major histocompatibility complex
- Mutant immunity protein 9 (variant R12-2)
- Butyrylcholinesterase
- Human acid-beta-glucosidase covalently bound to conduritol B epoxide
- Avidin
- Human Acetylcholinesterase
- FK506 binding protein
- Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis
- Catalase
- Albumin
- Aminopeptidase
- Staphylococcal nuclease
- Virus protease
- NAC transcription factor
- Kemp eliminase
- Antizyme Inhibitor
- Neuraminidase
- Carbonic anhydrase
- Carboxypeptidase
- ABC transporter
- Ubiquitin
- Cytochrome P450
- TEM1-beta-Lactamase/beta-lactamase Inhibitor Protein (BLIP)
- Acid beta-glucosidase with N-butyl-deoxynojirimycin
- Treatment of Gaucher disease
- Acyl carrier protein synthase
- Chimeras of alcohol dehydrogenases
- Dihydrodipicolinate synthase
- Directed evolution
- Colicin Immunity Protein
- Human FKBP52
