User:Alexander Berchansky

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 159: Line 159:
*[[Journal:Acta Cryst D:S2059798319000214|In-house high energy remote SAD-phasing using the magic triangle: how to tackle the P1 low symmetry using multiple orientations on the same human IBA57 crystal to increase multiplicity]]
*[[Journal:Acta Cryst D:S2059798319000214|In-house high energy remote SAD-phasing using the magic triangle: how to tackle the P1 low symmetry using multiple orientations on the same human IBA57 crystal to increase multiplicity]]
*[[Journal:Acta Cryst D:S2059798319002912|Crystal structure of the pseudoenzyme PDX1.2 in complex with its cognate enzyme PDX1.3]]
*[[Journal:Acta Cryst D:S2059798319002912|Crystal structure of the pseudoenzyme PDX1.2 in complex with its cognate enzyme PDX1.3]]
-
*[[Journal:Acta Cryst F:S2053230X18016217|The structure of ''Mycobacterium tuberculosis'' HtrA reveals an auto-regulatory mechanism]]
+
# [[Journal:Acta Cryst F:S2053230X18016217|The structure of ''Mycobacterium tuberculosis'' HtrA reveals an auto-regulatory mechanism]], Arvind Kumar Gupta, Debashree Behera and Balasubramanian Gopal [http://dx.doi.org/10.1107/S2053230X18016217 http://dx.doi.org/10.1107/S2053230X18016217]
-
*[[Journal:Acta Cryst F:S2053230X18014814|Crystal structure and kinetic analyses of a hexameric form of (S)-3-hydroxybutyryl-CoA dehydrogenase from Clostridium acetobutylicum]]
+
# [[Journal:Acta Cryst F:S2053230X18014814|Crystal structure and kinetic analyses of a hexameric form of (S)-3-hydroxybutyryl-CoA dehydrogenase from Clostridium acetobutylicum]], Mihoko Takenoya, Seiichi Taguchi and Shunsuke Yajima [http://dx.doi.org/10.1107/S2053230X18014814 http://dx.doi.org/10.1107/S2053230X18014814]
-
*[[Journal:BMC:3|Identification of novel isocytosine derivatives as xanthine oxidase inhibitors from a set of virtual screening hits]]
+
# [[Journal:Acta Cryst F:S2053230X19000815|Crystal structure of Type VI immunity protein Tdi1 (Atu4351) from Agrobacterium tumefaciens]], Lingling Shi, Zengqiang Gao, Tianyi Zhang, Heng Zhang and Yuhui Dong [http://dx.doi.org/10.1107/S2053230X19000815 http://dx.doi.org/10.1107/S2053230X19000815]
 +
# [[Journal:Acta Cryst F:S2053230X19004151|Phasing with calcium at home]], Shuaiqi Guo, Robert Campbell, Peter L. Davies and John S. Allingham [http://dx.doi.org/10.1107/S2053230X19004151 http://dx.doi.org/10.1107/S2053230X19004151]
 +
# [[Journal:Acta Cryst F:S2053230X19001213|Substrate analogue complex structure of ''Mycobacterium tuberculosis'' decaprenyl diphosphate synthase]], Tzu-Ping Ko, Xiansha Xiao, Rey-Ting Guo, Jian-Wen Huang, Weidong Liu, Chun-Chi Chen [http://dx.doi.org/10.1107/S2053230X19001213 http://dx.doi.org/10.1107/S2053230X19001213]
 +
# [[Journal:Acta Cryst F:S2053230X19004618|Novel T9 loop interaction of Filamenting Temperature-sensitive mutant Z from ''Mycobacterium tuberculosis'']], E. O. Lazo, J. Jakoncic, S. RoyChowdhury, D. Awasthi, I. Ojima [http://dx.doi.org/10.1107/S2053230X19004618 http://dx.doi.org/10.1107/S2053230X19004618]
 +
# [[Journal:Acta Cryst F:S1744309112050270|Crystal structure of ADL1, a plant-specific homologue of the universal diaminopimelate amino transferase enzyme of lysine biosynthesis]], Vladimir Sobolev, Marvin Edelman, Orly Dym, Tamar Unger, Shira Albeck, Menny Kirma and Gad Galili [http://www.ncbi.nlm.nih.gov/pubmed/23385743 http://www.ncbi.nlm.nih.gov/pubmed/23385743]
 +
# [[Journal:Acta Cryst F:S2053230X19002863|Functional and structural characterization of IdnL7, an adenylation enzyme involved in incednine biosynthesis]], Jolanta Cieślak, Akimasa Miyanaga, Makoto Takaishi, Fumitaka Kudo, Tadashi Eguchi [http://dx.doi.org/10.1107/S2053230X19002863 http://dx.doi.org/10.1107/S2053230X19002863]
 +
# [[Journal:Acta Cryst F:S2053230X19004424|Structure of the Ebola virus nucleoprotein - RNA complex]], Robert N. Kirchdoerfer, Erica Ollmann Saphire, Andrew B. Ward [http://dx.doi.org/10.1107/S2053230X19004424 http://dx.doi.org/10.1107/S2053230X19004424]
 +
# [[Journal:Acta Cryst F:S1744309112003326|Structure of recombinant human carboxylesterase 1 isolated from whole cabbage looper larvae]], Harry M. Greenblatt, Tamara C. Otto, Melanie G. Kirkpatrick, Elena Kovaleva, Susan Brown, George Buchman, Douglas M. Cerasoli and Joel L. Sussman [http://dx.doi.org/10.1107/S1744309112003326 http://dx.doi.org/10.1107/S1744309112003326]
 +
# [[Journal:Acta Cryst F:S2053230X18018083|An assessment of three human methylenetetrahydrofolate dehydrogenase/cyclohydrolase ligand complexes following further refinement]], Renata V. Bueno, Alice Dawson and William N. Hunter [http://dx.doi.org/10.1107/S2053230X18018083 http://dx.doi.org/10.1107/S2053230X18018083]
 +
# [[Journal:Acta Cryst F:S2053230X19002693|Crystal structure of phosphoribulokinase from ''Synechococcus sp.'' strain PCC 6301]], Robert Wilson, Manajit Hayer-Hartl and Andreas Bracher [http://dx.doi.org/10.1107/S2053230X19002693 http://dx.doi.org/10.1107/S2053230X19002693]
*[[SUMO]]
*[[SUMO]]
*[[EPSP synthase]]
*[[EPSP synthase]]

Revision as of 13:15, 27 May 2019

Dr. Alexander Berchansky, Ph.D., Israel Structural Proteomics Center, Weizmann Institute of Science

My interesting pages:

CRISPR-Cas (under development):

Classification according to the Wikipedia page CRISPR [1] with additions

CRISPR Class 1 uses a complex of multiple Cas proteins

CRISPR type I (Cas3)

CRISPR type I-A (Cascade) - see CRISPR subtype I-A

CRISPR type I-B (Cascade) - see CRISPR subtype I-B

CRISPR type I-C (Cascade) - see CRISPR subtype I-C

CRISPR type I-D (Cas10d)

CRISPR type I-E (Cascade) - see CRISPR subtype I-E

CRISPR type I-F (Csy1, Csy2, Csy3) - see CRISPR subtype I-F

CRISPR type I-U (GSU0054)

CRISPR type III (Cas10)

CRISPR type III-A (Csm complex) - see CRISPR subtype III-A (Csm complex)

CRISPR type III-B (Cmr complex)

CRISPR type III-C (Cas10 or Csx11)

CRISPR type III-D (Csx10)

CRISPR type Orphan

CRISPR type IV (Csf1)

CRISPR type IV-A

CRISPR type IV-B

CRISPR Class 2 uses a single large Cas protein

CRISPR type II-A - see CRISPR-Cas9

CRISPR type II-B (Cas4)

CRISPR type II-C

CRISPR type V (Cpf1, C2c1, C2c3) - see CRISPR type V

CRISPR type VI (Cas13a (previously known as C2c2), Cas13b, Cas13c, Cas13d) - see CRISPR type VI

  1. The structure of Mycobacterium tuberculosis HtrA reveals an auto-regulatory mechanism, Arvind Kumar Gupta, Debashree Behera and Balasubramanian Gopal http://dx.doi.org/10.1107/S2053230X18016217
  2. Crystal structure and kinetic analyses of a hexameric form of (S)-3-hydroxybutyryl-CoA dehydrogenase from Clostridium acetobutylicum, Mihoko Takenoya, Seiichi Taguchi and Shunsuke Yajima http://dx.doi.org/10.1107/S2053230X18014814
  3. Crystal structure of Type VI immunity protein Tdi1 (Atu4351) from Agrobacterium tumefaciens, Lingling Shi, Zengqiang Gao, Tianyi Zhang, Heng Zhang and Yuhui Dong http://dx.doi.org/10.1107/S2053230X19000815
  4. Phasing with calcium at home, Shuaiqi Guo, Robert Campbell, Peter L. Davies and John S. Allingham http://dx.doi.org/10.1107/S2053230X19004151
  5. Substrate analogue complex structure of Mycobacterium tuberculosis decaprenyl diphosphate synthase, Tzu-Ping Ko, Xiansha Xiao, Rey-Ting Guo, Jian-Wen Huang, Weidong Liu, Chun-Chi Chen http://dx.doi.org/10.1107/S2053230X19001213
  6. Novel T9 loop interaction of Filamenting Temperature-sensitive mutant Z from Mycobacterium tuberculosis, E. O. Lazo, J. Jakoncic, S. RoyChowdhury, D. Awasthi, I. Ojima http://dx.doi.org/10.1107/S2053230X19004618
  7. Crystal structure of ADL1, a plant-specific homologue of the universal diaminopimelate amino transferase enzyme of lysine biosynthesis, Vladimir Sobolev, Marvin Edelman, Orly Dym, Tamar Unger, Shira Albeck, Menny Kirma and Gad Galili http://www.ncbi.nlm.nih.gov/pubmed/23385743
  8. Functional and structural characterization of IdnL7, an adenylation enzyme involved in incednine biosynthesis, Jolanta Cieślak, Akimasa Miyanaga, Makoto Takaishi, Fumitaka Kudo, Tadashi Eguchi http://dx.doi.org/10.1107/S2053230X19002863
  9. Structure of the Ebola virus nucleoprotein - RNA complex, Robert N. Kirchdoerfer, Erica Ollmann Saphire, Andrew B. Ward http://dx.doi.org/10.1107/S2053230X19004424
  10. Structure of recombinant human carboxylesterase 1 isolated from whole cabbage looper larvae, Harry M. Greenblatt, Tamara C. Otto, Melanie G. Kirkpatrick, Elena Kovaleva, Susan Brown, George Buchman, Douglas M. Cerasoli and Joel L. Sussman http://dx.doi.org/10.1107/S1744309112003326
  11. An assessment of three human methylenetetrahydrofolate dehydrogenase/cyclohydrolase ligand complexes following further refinement, Renata V. Bueno, Alice Dawson and William N. Hunter http://dx.doi.org/10.1107/S2053230X18018083
  12. Crystal structure of phosphoribulokinase from Synechococcus sp. strain PCC 6301, Robert Wilson, Manajit Hayer-Hartl and Andreas Bracher http://dx.doi.org/10.1107/S2053230X19002693

Proteopedia Page Contributors and Editors (what is this?)

Alexander Berchansky, Eran Hodis

Personal tools