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User:Alexander Berchansky

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Line 10: Line 10:
*[[Mutations in Brca1 BRCT Domains]]
*[[Mutations in Brca1 BRCT Domains]]
*[[Lactate Dehydrogenase]]
*[[Lactate Dehydrogenase]]
 +
*[[Human Acetylcholinesterase]]
*[[Journal:Proteins:2|Missense Mutations in Phenylalanine Hydroxylase]]
*[[Journal:Proteins:2|Missense Mutations in Phenylalanine Hydroxylase]]
-
*[[Journal:JBIC:8|A hydrogen-bonding network formed by the B10-E7-E11 residues of a truncated hemoglobin from Tetrahymena pyriformis is critical for stability of bound oxygen and nitric oxide detoxification]]
+
*[[Ferredoxin]]
*[[Phosphofructokinase (PFK)]]
*[[Phosphofructokinase (PFK)]]
*[[Alcohol dehydrogenase]]
*[[Alcohol dehydrogenase]]
*[[Beta-glucosidase]]
*[[Beta-glucosidase]]
-
*[[BLUF domain protein]]
+
*[[Aricept Complexed with Acetylcholinesterase (Hebrew)]]
-
*[[AMP-activated protein kinase]]
+
*[[Aricept Complexed with Acetylcholinesterase (Russian)]]
-
*[[SUMO]]
+
*[[Prion]]
 +
*[[Viral capsids]]
 +
*[[Journal:Acta Cryst D:S2059798320011869|Lattice-translocation defects in some specific crystals of the catalytic head domain of influenza neuraminidase]], Linghui Li, Shuliu Dai, George F. Gao and Jiawei Wang [http://dx.doi.org/10.1107/S2059798320011869 http://dx.doi.org/10.1107/S2059798320011869]
 +
*[[Proteins from Mycobacterium tuberculosis]]
 +
*[[Treatment of Tuberculosis]]
 +
*[[Iron–sulfur proteins]]
 +
*[[Hemeproteins]]
 +
*[[Neurotransmitters]]
 +
*[[Growth factors]]
 +
*[[Receptor]]
 +
*[[Hormones and their receptors]]
'''CRISPR-Cas (under development):'''
'''CRISPR-Cas (under development):'''
-
*[[CRISPR-Cas9]]
 
*[[CRISPR-Cas|CRISPR-Cas Part I]]
*[[CRISPR-Cas|CRISPR-Cas Part I]]
*[[CRISPR-Cas Part II]]
*[[CRISPR-Cas Part II]]
 +
*[[CRISPR-Cas9]]
 +
 +
'''Classification according to the Wikipedia page CRISPR [https://en.wikipedia.org/wiki/CRISPR] with additions'''
 +
 +
'''CRISPR Class 1 uses a complex of multiple Cas proteins'''
 +
 +
CRISPR type I (Cas3)
 +
 +
CRISPR type I-A (Cascade) - see [[CRISPR subtype I-A]]
 +
 +
CRISPR type I-B (Cascade) - see [[CRISPR subtype I-B]]
 +
 +
CRISPR type I-C (Cascade) - see [[CRISPR subtype I-C]]
 +
 +
CRISPR type I-D (Cas10d)
-
'''CRISPR Class 1'''
+
CRISPR type I-E (Cascade) - see [[CRISPR type I-E (Cascade)|CRISPR subtype I-E]]
-
CRISPR subtype I-A (Cascade) - SEE [[CRISPR subtype I-A]]
+
CRISPR type I-F (Csy1, Csy2, Csy3) - see [[CRISPR subtype I-F]]
-
CRISPR subtype I-B (Cascade) - SEE [[CRISPR subtype I-B]]
+
CRISPR type I-U (GSU0054)
-
CRISPR subtype I-C (Cascade) - SEE [[CRISPR subtype I-C]]
+
CRISPR type III (Cas10)
-
CRISPR subtype I-E (Cascade) - SEE [[CRISPR type I-E (Cascade)|CRISPR subtype I-E]]
+
CRISPR type III-A (Csm complex) - see [[CRISPR subtype III-A (Csm complex)]]
-
CRISPR subtype I-F (Cascade) - SEE [[CRISPR subtype I-F]]
+
CRISPR type III-B (Cmr complex)
-
CRISPR subtype III-A (Csm complex) - SEE [[CRISPR subtype III-A (Csm complex)]]
+
CRISPR type III-C (Cas10 or Csx11)
-
CRISPR subtype III-B (Cmr complex)
+
CRISPR type III-D (Csx10)
-
CRISPR subtype Orphan
+
CRISPR type Orphan
CRISPR type IV (Csf1)
CRISPR type IV (Csf1)
-
'''CRISPR Class 2'''
+
CRISPR type IV-A
-
CRISPR type II - SEE [[CRISPR-Cas9]]
+
CRISPR type IV-B
-
CRISPR type V (Cpf1) - SEE [[CRISPR type V]]
+
'''CRISPR Class 2 uses a single large Cas protein'''
-
CRISPR type VI (C2c2)
+
CRISPR type II-A - see [[CRISPR-Cas9]]
-
*[[Journal:Acta Cryst D:S0907444911047251|Flexibility of the flap in the active site of BACE1 as revealed by crystal structures and molecular dynamics simulations]]
+
CRISPR type II-B (Cas4)
-
*[[Journal:Acta Cryst D:S2059798318000050|A DNA structural alphabet provides new insight into DNA flexibility]]
+
 
-
*[[Journal:Acta Cryst F:S1744309112050270|Crystal structure of ADL1, a plant-specific homologue of the universal diaminopimelate amino transferase enzyme of lysine biosynthesis]]
+
CRISPR type II-C
-
*[[Journal:Acta Cryst F:S1744309112003326|Structure of recombinant human carboxylesterase 1 isolated from whole cabbage looper larvae]]
+
 
 +
CRISPR type V (Cpf1, C2c1, C2c3) - see [[CRISPR type V]]
 +
 
 +
CRISPR type VI (Cas13a (previously known as C2c2), Cas13b, Cas13c, Cas13d) - see [[CRISPR type VI]]
 +
 
 +
*[[Journal:Protein Science:3|''Torpedo californica'' acetylcholinesterase is stabilized by binding of a divalent metal ion to a novel and versatile 4D motif]]
 +
*[[Journal:IUCrJ:S2052252521005340|X-ray crystallography studies of RoAb13 bound to PIYDIN, a part of the CCR5 N-terminal domain]]
 +
*[[Journal:Acta Cryst F:S2053230X20016015|Using Yeast Surface Display to Engineer a Soluble and Crystallizable Construct of HPK1]]
 +
*[[Journal:Acta Cryst D:S2059798320015004|The substrate binding in the bile acid transporter ASBT<sub>Yf</sub> of ''Yersinia frederiksenii'']]
 +
*[[Journal:Acta Cryst D:S205979832001517X|An engineered disulfide bridge traps and validates an outward-facing conformation in a bile acid transporter]]
 +
*[[Journal:Acta Cryst D:S2059798321003922|Structure of the human factor VIIa/soluble tissue factor with calcium, magnesium and rubidium]]
*[[Journal:Angew Chem Int Ed:1|Fine tuning of chlorophyll spectra by protein-induced ring deformation]]
*[[Journal:Angew Chem Int Ed:1|Fine tuning of chlorophyll spectra by protein-induced ring deformation]]
-
*[[Xanthine dehydrogenase]]
+
*[[Journal:JBIC:8|A hydrogen-bonding network formed by the B10-E7-E11 residues of a truncated hemoglobin from Tetrahymena pyriformis is critical for stability of bound oxygen and nitric oxide detoxification]]
 +
*[[Journal:JBIC:12|ISC-like [2Fe-2S] ferredoxin (FdxB) dimer from ''Pseudomonas putida'' JCM 20004: Structural and electron nuclear double resonance characterization]]
*[[Journal:JBIC:13|{{nowrap|N-Butylisocyanide Oxidation}} at the {{nowrap|&#91;NiFe<sub>4</sub>S<sub>4</sub>OH<sub>x</sub>&#93;-cluster}} of CO Dehydrogenase]]
*[[Journal:JBIC:13|{{nowrap|N-Butylisocyanide Oxidation}} at the {{nowrap|&#91;NiFe<sub>4</sub>S<sub>4</sub>OH<sub>x</sub>&#93;-cluster}} of CO Dehydrogenase]]
*[[Journal:JBIC:14|Multifaceted SlyD from ''Helicobacter pylori'': implication in [NiFe] hydrogenase maturation]]
*[[Journal:JBIC:14|Multifaceted SlyD from ''Helicobacter pylori'': implication in [NiFe] hydrogenase maturation]]
 +
*[[Journal:Acta Cryst D:S2059798320014540|Statistically correcting dynamical electron scattering improves refinement of protein nanocrystals, including charge refinement of coordinated metals]]
*[[Journal:JBIC:15|Potent Inhibition of Dinuclear Zinc(II) Peptidase, an Aminopeptidase from Aeromonas proteolytica, by 8-Quinolinol Derivatives: Inhibitor Design Based on Zn2+ Fluorophores, Kinetic, and X-ray Crystallographic Study]]
*[[Journal:JBIC:15|Potent Inhibition of Dinuclear Zinc(II) Peptidase, an Aminopeptidase from Aeromonas proteolytica, by 8-Quinolinol Derivatives: Inhibitor Design Based on Zn2+ Fluorophores, Kinetic, and X-ray Crystallographic Study]]
*[[Journal:JBIC:16|Laue Crystal Structure of ''Shewanella oneidensis'' Cytochrome c Nitrite Reductase from a High-yield Expression System]]
*[[Journal:JBIC:16|Laue Crystal Structure of ''Shewanella oneidensis'' Cytochrome c Nitrite Reductase from a High-yield Expression System]]
Line 83: Line 120:
*[[Journal:JBIC:7|Structural and kinetic studies of imidazole binding to two members of the cytochrome c6 family reveal an important role for a conserved heme pocket residue]]
*[[Journal:JBIC:7|Structural and kinetic studies of imidazole binding to two members of the cytochrome c6 family reveal an important role for a conserved heme pocket residue]]
*[[Journal:JBIC:9|Protein and metal cluster structure of the wheat metallothionein domain &gamma;-Ec-1. The second part of the puzzle.]]
*[[Journal:JBIC:9|Protein and metal cluster structure of the wheat metallothionein domain &gamma;-Ec-1. The second part of the puzzle.]]
-
*[[Ferredoxin]]
 
*[[Journal:JBIC:11|{{nowrap|A Cryo-Crystallographic}} Time Course for Peroxide Reduction by Rubrerythrin from ''Pyrococcus furiosus'']]
*[[Journal:JBIC:11|{{nowrap|A Cryo-Crystallographic}} Time Course for Peroxide Reduction by Rubrerythrin from ''Pyrococcus furiosus'']]
*[[Journal:JMB:1|Cyt1Aa Toxin: High Resolution Structure Reveals Implications for its Membrane-Perforating Function]]
*[[Journal:JMB:1|Cyt1Aa Toxin: High Resolution Structure Reveals Implications for its Membrane-Perforating Function]]
Line 126: Line 162:
*[[Journal:JBSD:40|Traditional Chinese medicine application in HIV: An ''in silico'' study]]
*[[Journal:JBSD:40|Traditional Chinese medicine application in HIV: An ''in silico'' study]]
*[[Journal:JBSD:41|Molecular Mechanism of HIV-1 gp120 Mutations That Reduce CD4 Binding Affinity]]
*[[Journal:JBSD:41|Molecular Mechanism of HIV-1 gp120 Mutations That Reduce CD4 Binding Affinity]]
 +
*[[Book:Structural Proteomics and its Impact on the Life Sciences:6]]‎
 +
*[[Journal:Acta Cryst D:S0907444911047251|Flexibility of the flap in the active site of BACE1 as revealed by crystal structures and molecular dynamics simulations]]
 +
*[[Journal:Acta Cryst D:S2059798318000050|A DNA structural alphabet provides new insight into DNA flexibility]]
 +
*[[Journal:Acta Cryst D:S2059798319000676|Crystal structures of pyrrolidone-carboxylate peptidase I from ''Deinococcus radiodurans'' reveal the mechanism of L-pyroglutamate recognition]]
 +
*[[Journal:Acta Cryst D:S2059798318014900|Structure of the AmyC GH13 alpha-amylase from Alicyclobacillus sp, reveals accommodation of starch branching points in the alpha-amylase family]]
 +
*[[Journal:Acta Cryst D:S2059798318017047|The crystal structure of the N-acetylglucosamine 2-epimerase from Nostoc sp. KVJ10 reveals the true dimer]]
 +
*[[Journal:Acta Cryst D:S2059798318015322|Structure of ISG15 from the bat species Myotis davidii and the impact of interdomain ISG15 interactions on viral protein engagement]]
 +
*[[Journal:Acta Cryst D:S2059798319000214|In-house high energy remote SAD-phasing using the magic triangle: how to tackle the P1 low symmetry using multiple orientations on the same human IBA57 crystal to increase multiplicity]]
 +
*[[Journal:Acta Cryst D:S2059798319002912|Crystal structure of the pseudoenzyme PDX1.2 in complex with its cognate enzyme PDX1.3]]
 +
*[[Journal:Acta Cryst D:S2059798319007113|Crystal Structure Determination of ''Pseudomonas stutzeri'' A1501 endoglucanase Cel5A]]
 +
*[[Journal:Acta Cryst D:S2059798319006995|Structural insight into a matured humanized monoclonal antibody HuA21 against HER2-overexpressing cancer cells]]
 +
*[[Journal:Acta Cryst D:S2059798319002304|The third structural switch in the molecule of archaeal translation initiation factor 2 and its possible role in initiation of GTP hydrolysis and removal of aIF2 from the ribosome]]
 +
*[[Journal:Acta Cryst D:S2059798319004169|Structural and functional insights into phosphomannose isomerase]]
 +
*[[Journal:Acta Cryst F:S2053230X18016217|The structure of ''Mycobacterium tuberculosis'' HtrA reveals an auto-regulatory mechanism]]
 +
*[[Journal:Acta Cryst F:S2053230X18014814|Crystal structure and kinetic analyses of a hexameric form of (S)-3-hydroxybutyryl-CoA dehydrogenase from Clostridium acetobutylicum]]
 +
*[[Journal:Acta Cryst F:S2053230X19000815|Crystal structure of Type VI immunity protein Tdi1 (Atu4351) from Agrobacterium tumefaciens]]
 +
*[[Journal:Acta Cryst F:S2053230X19004151|Phasing with calcium at home]]
 +
*[[Journal:Acta Cryst F:S2053230X19001213|Substrate analogue complex structure of ''Mycobacterium tuberculosis'' decaprenyl diphosphate synthase]]
 +
*[[Journal:Acta Cryst F:S2053230X19004618|Novel T9 loop interaction of Filamenting Temperature-sensitive mutant Z from ''Mycobacterium tuberculosis'']]
 +
*[[Journal:Acta Cryst F:S1744309112050270|Crystal structure of ADL1, a plant-specific homologue of the universal diaminopimelate amino transferase enzyme of lysine biosynthesis]]
 +
*[[Journal:Acta Cryst F:S2053230X19002863|Functional and structural characterization of IdnL7, an adenylation enzyme involved in incednine biosynthesis]]
 +
*[[Journal:Acta Cryst F:S2053230X19004424|Structure of the Ebola virus nucleoprotein - RNA complex]]
 +
*[[Journal:Acta Cryst F:S1744309112003326|Structure of recombinant human carboxylesterase 1 isolated from whole cabbage looper larvae]]
 +
*[[Journal:Acta Cryst F:S2053230X18018083|An assessment of three human methylenetetrahydrofolate dehydrogenase/cyclohydrolase ligand complexes following further refinement]]
 +
*[[Journal:Acta Cryst F:S2053230X19002693|Crystal structure of phosphoribulokinase from ''Synechococcus sp.'' strain PCC 6301]]
 +
*[[Journal:Acta Cryst F:S1744309112003326|Structure of recombinant human carboxylesterase 1 isolated from whole cabbage looper larvae]]
 +
*[[Journal:Acta Cryst F:S2053230X19007192|Crystal Structure of Flavin Dependent Thymidylate Synthase, Thy1, from ''Thermus thermophilus'' having an Extra C Terminal Domain]]
 +
*[[Journal:BMC:3|Identification of novel isocytosine derivatives as xanthine oxidase inhibitors from a set of virtual screening hits]]
 +
*[[Journal:FEBS Open Bio:2|Structural evidence for Arabidopsis glutathione transferase AtGSTF2 functioning as a transporter of small organic ligands]]
 +
*[[Journal:IUCrJ:S2052252519002926|Determination of the Molecular Basis for Coprogen Import by Gram Negative Bacteria]]
 +
*[[Journal:IUCrJ:S2052252519001568|Structure of mammalian plasma fetuin-B and its mechanism of selective metallopeptidase inhibition]]
 +
*[[Journal:IUCrJ:S2052252518018274|A cytosine modification mechanism revealed by the ternary complex structure of deoxycytidylate hydroxymethylase from bacteriophage T4 with its cofactor and substrate]]
 +
*[[Journal:IUCrJ:S2052252519005372|The structural characterisation of a glucosylglycerate hydrolase provides insights into the molecular mechanism of mycobacterial recovery from nitrogen starvation]]
 +
*[[Journal:IUCrJ:S2052252519005761|Room-temperature photo-induced martensitic transformation in a protein crystal]]
 +
*[[SUMO]]
 +
*[[EPSP synthase]]
 +
*[[AMP-activated protein kinase]]
 +
*[[Xanthine dehydrogenase]]
*[[Nicotinic Acetylcholine Receptor]]
*[[Nicotinic Acetylcholine Receptor]]
*[[Cytochrome c]]
*[[Cytochrome c]]
Line 148: Line 222:
*[[Avidin]]
*[[Avidin]]
*[[Proteasome]]
*[[Proteasome]]
-
*[[Human Acetylcholinesterase]]
 
*[[FK506 binding protein]]
*[[FK506 binding protein]]
*[[Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis]]
*[[Insecticidal delta-endotoxin Cyt2Ba from Bacillus thuringiensis]]
Line 160: Line 233:
*[[NAC transcription factor]]
*[[NAC transcription factor]]
*[[Kemp eliminase]]
*[[Kemp eliminase]]
-
*[[Antizyme Inhibitor]]
 
*[[NADPH-Cytochrome P450 Reductase]]
*[[NADPH-Cytochrome P450 Reductase]]
*[[Prolyl hydroxylase domain]]
*[[Prolyl hydroxylase domain]]
Line 198: Line 270:
*[[Cathepsin]]
*[[Cathepsin]]
*[[Prolyl Endopeptidase]]
*[[Prolyl Endopeptidase]]
 +
*[[Forkhead box protein]]
*[[Subtilisin]]
*[[Subtilisin]]
*[[Hyaluronidase]]
*[[Hyaluronidase]]
Line 207: Line 280:
*[[Chitinase]]
*[[Chitinase]]
*[[Cluster of Differentiation CD38]]
*[[Cluster of Differentiation CD38]]
-
*[[Aricept Complexed with Acetylcholinesterase (Russian)]]
 
*[[Tubulin]]
*[[Tubulin]]
*[[SAM-dependent methyltransferase]]
*[[SAM-dependent methyltransferase]]
Line 214: Line 286:
*[[Methylesterase]]
*[[Methylesterase]]
*[[CAMP-dependent protein kinase]]
*[[CAMP-dependent protein kinase]]
 +
*[[Plasminogen]]
*[[Choline Oxidase]]
*[[Choline Oxidase]]
 +
*[[Thioesterase]]
 +
*[[Dopamine receptor]]
 +
*[[Mitogen-activated protein kinase kinase]]
*[[Kinesin]]
*[[Kinesin]]
*[[Gelsolin]]
*[[Gelsolin]]
*[[DNA glycosylase]]
*[[DNA glycosylase]]
*[[Mitogen-activated protein kinase]]
*[[Mitogen-activated protein kinase]]
 +
*[[Factor VIII]]
*[[BtuB]]
*[[BtuB]]
 +
*[[BLUF domain protein]]
*[[Botulinum neurotoxin]]
*[[Botulinum neurotoxin]]
*[[Blue copper oxidase CueO]]
*[[Blue copper oxidase CueO]]
Line 228: Line 306:
*[[Bacteriorhodopsin]]
*[[Bacteriorhodopsin]]
*[[BA42]]
*[[BA42]]
 +
*[[Gramicidin]]
 +
*[[Horseradish peroxidase]]
*[[Azurin]]
*[[Azurin]]
*[[Avirulence protein]]
*[[Avirulence protein]]
Line 233: Line 313:
*[[ATP-citrate synthase]]
*[[ATP-citrate synthase]]
*[[Atlastin]]
*[[Atlastin]]
 +
*[[Catabolite gene activator protein]]
 +
*[[Cytochrome bc1 complex]]
 +
*[[Lactoferrin]]
 +
*[[Glycosyltransferase]]
 +
*[[Factor inhibiting HIF]]
 +
*[[Ephrin receptor]]
*[[Aspartoacylase]]
*[[Aspartoacylase]]
*[[Aspartate carbamoyltransferase]]
*[[Aspartate carbamoyltransferase]]
 +
*[[Proliferating Cell Nuclear Antigen]]
*[[Aspartate-semialdehyde dehydrogenase]]
*[[Aspartate-semialdehyde dehydrogenase]]
*[[Ascorbate peroxidase]]
*[[Ascorbate peroxidase]]
Line 251: Line 338:
*[[Agglutinin]]
*[[Agglutinin]]
*[[ADP-ribose pyrophosphatase]]
*[[ADP-ribose pyrophosphatase]]
 +
*[[Poly (ADP-ribose) polymerase]]
*[[Adenylosuccinate lyase]]
*[[Adenylosuccinate lyase]]
*[[Adenosine kinase]]
*[[Adenosine kinase]]
Line 263: Line 351:
*[[Acetyl-CoA synthetase]]
*[[Acetyl-CoA synthetase]]
*[[Acetyl-CoA synthase]]
*[[Acetyl-CoA synthase]]
 +
*[[Cytochrome c oxidase]]
 +
*[[Concanavalin A]]
 +
*[[Neurexin]]
 +
*[[Histone deacetylase]]
 +
*[[Purine repressor]]
 +
*[[Protein phosphatase]]
 +
*[[Glutamate synthase]]
*[[4-hydroxy-3-methylbut-2-enyl diphosphate reductase]]
*[[4-hydroxy-3-methylbut-2-enyl diphosphate reductase]]
*[[6-aminohexanoate-dimer hydrolase]]
*[[6-aminohexanoate-dimer hydrolase]]
Line 268: Line 363:
*[[7,8-dihydro-8-oxoguanine triphosphatase]]
*[[7,8-dihydro-8-oxoguanine triphosphatase]]
*[[Cell division protein]]
*[[Cell division protein]]
 +
*[[Carbon monoxide dehydrogenase]]
 +
*[[CXC chemokine receptor]]
 +
*[[Cyclin-dependent kinase]]
*[[12-oxophytodienoate reductase]]
*[[12-oxophytodienoate reductase]]
 +
*[[Enoyl-Acyl-Carrier Protein Reductase]]
 +
*[[Dihydrolipoamide acetyltransferase]]
*[[Alpha-glucosidase]]
*[[Alpha-glucosidase]]
*[[Apoptotic protease-activating factor]]
*[[Apoptotic protease-activating factor]]
Line 274: Line 374:
*[[Adhesin]]
*[[Adhesin]]
*[[Arabinanase]]
*[[Arabinanase]]
 +
*[[Gp120]]
 +
*[[GMP synthase]]
 +
*[[Leukotriene A4 Hydrolase]]
*[[Biotin Protein Ligase]]
*[[Biotin Protein Ligase]]
*[[Androgen receptor]]
*[[Androgen receptor]]
 +
*[[Glutamate dehydrogenase]]
*[[14-3-3 protein]]
*[[14-3-3 protein]]
 +
*[[Fibrin]]
*[[3C protease]]
*[[3C protease]]
*[[GTPase KRas]]
*[[GTPase KRas]]
Line 291: Line 396:
*[[Nitrophorin]]
*[[Nitrophorin]]
*[[VprBP]]
*[[VprBP]]
 +
*[[Growth factor receptor-bound protein]]
 +
*[[CREB-binding protein]]
 +
*[[Kdo-8-phosphate synthase]]
*[[Signal recognition particle receptor]]
*[[Signal recognition particle receptor]]
*[[Liver receptor homolog-1]]
*[[Liver receptor homolog-1]]
Line 300: Line 408:
*[[GABA(A) receptor-associated protein]]
*[[GABA(A) receptor-associated protein]]
*[[IspG]]
*[[IspG]]
 +
*[[Haloperoxidase]]
*[[Cytochrome P450 hydroxylase]]
*[[Cytochrome P450 hydroxylase]]
*[[Period circadian protein]]
*[[Period circadian protein]]
*[[Proteinase]]
*[[Proteinase]]
*[[Sialyltransferase]]
*[[Sialyltransferase]]
 +
*[[Neprilysin]]
 +
*[[Cholesterol esterase]]
 +
*[[Chloramphenicol acetyltransferase]]
*[[Thiolase]]
*[[Thiolase]]
 +
*[[CCA-adding enzyme]]
 +
*[[Glucose-fructose oxidoreductase]]
*[[Tripeptidyl peptidase]]
*[[Tripeptidyl peptidase]]
*[[Tryptophan synthase]]
*[[Tryptophan synthase]]
 +
*[[Fatty acid synthase]]
 +
*[[Glucosamine 6-phosphate synthase]]
*[[Rho GTPase activating protein]]
*[[Rho GTPase activating protein]]
 +
*[[Ornithine decarboxylase]]
*[[Prostaglandin D synthase]]
*[[Prostaglandin D synthase]]
*[[Prestin]]
*[[Prestin]]
Line 322: Line 439:
*[[Penicillin acylase]]
*[[Penicillin acylase]]
*[[PCSK9]]
*[[PCSK9]]
 +
*[[Galactose-binding lectin]]
*[[Paired box protein]]
*[[Paired box protein]]
 +
*[[D-xylose isomerase]]
 +
*[[Adrenodoxin reductase]]
 +
*[[Methylamine dehydrogenase]]
*[[Oligopeptide-binding protein]]
*[[Oligopeptide-binding protein]]
 +
*[[Met repressor]]
*[[Nuclear receptor coactivator]]
*[[Nuclear receptor coactivator]]
*[[Neuropilin]]
*[[Neuropilin]]
*[[NADH peroxidase]]
*[[NADH peroxidase]]
 +
*[[Deoxyuridine 5'-triphosphate nucleotidohydrolase]]
 +
*[[LDL receptor]]
*[[P63]]
*[[P63]]
 +
*[[Galactose oxidase]]
*[[Leukotriene B4 hydroxydehydrogenase]]
*[[Leukotriene B4 hydroxydehydrogenase]]
*[[Leukocyte immunoglobulin-like receptor]]
*[[Leukocyte immunoglobulin-like receptor]]
Line 333: Line 458:
*[[3-phosphoinositide-dependent protein kinase 1]]
*[[3-phosphoinositide-dependent protein kinase 1]]
*[[2-isopropylmalate synthase]]
*[[2-isopropylmalate synthase]]
 +
*[[Kelch-like protein]]
 +
*[[Lactoperoxidase]]
*[[Mur ligase]]
*[[Mur ligase]]
 +
*[[Calcineurin]]
 +
*[[S100 protein]]
 +
*[[Ecotin]]
 +
*[[Leukotriene C4 synthase]]
 +
*[[Jumonji domain-containing protein]]
*[[Monooxygenase]]
*[[Monooxygenase]]
*[[Vanillyl-alcohol oxidase]]
*[[Vanillyl-alcohol oxidase]]
 +
*[[Isopropylmalate dehydrogenase]]
*[[Tumor necrosis factor]]
*[[Tumor necrosis factor]]
*[[Tumor necrosis factor receptor]]
*[[Tumor necrosis factor receptor]]
Line 342: Line 475:
*[[Transport inhibitor response 1]]
*[[Transport inhibitor response 1]]
*[[Transducin]]
*[[Transducin]]
 +
*[[Nitrate reductase]]
 +
*[[Nitroreductase]]
 +
*[[Dihydroorotate dehydrogenase]]
*[[L-rhamnose isomerase]]
*[[L-rhamnose isomerase]]
*[[TRAIL]]
*[[TRAIL]]
 +
*[[Estrogen-related receptor]]
*[[Inosine monophosphate dehydrogenase]]
*[[Inosine monophosphate dehydrogenase]]
*[[Survivin]]
*[[Survivin]]
*[[UDP-N-acetylglucosamine acyltransferase]]
*[[UDP-N-acetylglucosamine acyltransferase]]
*[[Haptoglobin receptor]]
*[[Haptoglobin receptor]]
 +
*[[D-alanine-D-alanine ligase]]
*[[Glutaminyl cyclase]]
*[[Glutaminyl cyclase]]
*[[Severin]]
*[[Severin]]
 +
*[[Carnitine palmitoyltransferase]]
*[[Isoaspartyl dipeptidase]]
*[[Isoaspartyl dipeptidase]]
*[[Thiaminase]]
*[[Thiaminase]]
Line 358: Line 497:
*[[Rho-associated protein kinase]]
*[[Rho-associated protein kinase]]
*[[Endonuclease]]
*[[Endonuclease]]
 +
*[[Collagenase (non-MMP)]]
*[[Epoxidase]]
*[[Epoxidase]]
 +
*[[Ferrochelatase]]
*[[Elastase]]
*[[Elastase]]
 +
*[[Tyrosinase]]
*[[N-acetylornithine carbamoyltransferase]]
*[[N-acetylornithine carbamoyltransferase]]
*[[Ornithine carbamoyltransferase]]
*[[Ornithine carbamoyltransferase]]
Line 365: Line 507:
*[[Pantothenate synthetase]]
*[[Pantothenate synthetase]]
*[[Parvalbumin]]
*[[Parvalbumin]]
 +
*[[Cephalosporin acylase]]
*[[Dipeptidyl peptidase]]
*[[Dipeptidyl peptidase]]
 +
*[[Farnesyltransferase]]
 +
*[[Farnesyl diphosphate synthase]]
 +
*[[Arginine repressor]]
*[[Transferrin]]
*[[Transferrin]]
*[[Transketolase]]
*[[Transketolase]]
Line 387: Line 533:
*[[Rac]]
*[[Rac]]
*[[Rho GTPase]]
*[[Rho GTPase]]
 +
*[[Carbamoyl phosphate synthetase]]
*[[Dedicator of cytokinesis protein]]
*[[Dedicator of cytokinesis protein]]
*[[Phosphoribosylaminoimidazole carboxylase]]
*[[Phosphoribosylaminoimidazole carboxylase]]
Line 399: Line 546:
*[[Siderocalin]]
*[[Siderocalin]]
*[[Latrophilin]]
*[[Latrophilin]]
 +
*[[Folypolyglutamate synthase]]
 +
*[[WD repeat-containing protein]]
 +
*[[Xylosidase]]
 +
*[[Uridylate kinase]]
 +
*[[Penicillin-binding protein]]
 +
*[[Pentaerythritol tetranitrate reductase]]
 +
*[[Thymidine kinase]]
 +
*[[Thymidylate kinase]]
 +
*[[Tissue factor pathway inhibitor]]
 +
*[[Thioredoxin Reductase]]
 +
*[[Peptidyl-tRNA hydrolase]]
 +
*[[Peroxiredoxin]]
 +
*[[Phenylethanolamine N-methyltransferase]]
 +
*[[Tetracycline repressor protein]]
 +
*[[Phenylpyruvate decarboxylase]]
 +
*[[Succinate-semialdehyde dehydrogenase]]
 +
*[[Spermidine/spermine N-acetyltransferase]]
 +
*[[Sulfotransferase]]
 +
*[[Phosphomannomutase]]
 +
*[[Strictosidine Synthase]]
 +
*[[Phosphoenolpyruvate carboxykinase]]
 +
*[[Phosphoribosyltransferase]]
 +
*[[Phosphoserine aminotransferase]]
 +
*[[Phosphoserine phosphatase]]
 +
*[[Shikimate kinase]]
 +
*[[Shikimate dehydrogenase]]
 +
*[[Selectin]]
 +
*[[Selenocysteine synthase]]
 +
*[[Semaphorin]]
 +
*[[Serine palmitoyltransferase]]
 +
*[[SAM decarboxylase]]
 +
*[[SAM synthetase]]
 +
*[[S-adenosylhomocysteine hydrolase]]
 +
*[[Plasmepsin]]
 +
*[[RNA uridylyltransferase]]
 +
*[[Ribosomal protein S6 kinase]]
 +
*[[Poly(A) RNA polymerase protein Cid1]]
 +
*[[Ribonucleotide reductase]]
 +
*[[Phycocyanobilin:ferredoxin oxidoreductase]]
 +
*[[Poly (ADP-ribose) glycohydrolase]]
 +
*[[Rhomboid protease]]
 +
*[[Rhodopsin kinase]]
 +
*[[Retinol-binding protein]]
 +
*[[Polyneuridine Aldehyde Esterase]]
 +
*[[Retinoid X receptor]]
 +
*[[Porphobilinogen synthase]]
 +
*[[Retinoblastoma-binding protein]]
 +
*[[Pyruvate dehydrogenase kinase]]
 +
*[[Pyruvate-ferredoxin oxidoreductase]]
 +
*[[Pyrroline-5-carboxylate dehydrogenase]]
 +
*[[Purine nucleoside phosphorylase]]
 +
*[[Proline utilization A]]
 +
*[[Protein kinase C]]
 +
*[[Nucleoside diphosphate kinase]]
 +
*[[Formate dehydrogenase]]
 +
*[[NAD synthase]]
 +
*[[Nuclear transcription factor Y]]
 +
*[[Methanol dehydrogenase]]
 +
*[[Matriptase]]
 +
*[[Manganese peroxidase]]
 +
*[[Mandelate racemase]]
 +
*[[MEP cytidylyltransferase]]
 +
*[[Mandelate dehydrogenase]]
 +
*[[Malate synthase]]
 +
*[[Macrophage inhibitory factor]]
 +
*[[Homocitrate synthase]]
 +
*[[Hemagglutinin-esterase]]
 +
*[[Guanylate kinase]]
 +
*[[Granzyme]]
 +
*[[Glycosylasparaginase]]
 +
*[[Glutaryl-CoA dehydrogenase]]
 +
*[[Glutaminase]]
 +
*[[Glutamate racemase]]
 +
*[[Glucuronidase]]
 +
*[[Glucose-1-phosphate thymidylyltransferase]]
 +
*[[Geranylgeranyl transferase]]
 +
*[[Galactose mutarotase]]
 +
*[[Ficolin]]
 +
*[[Phosphoinositide phosphatase]]
 +
*[[Ferredoxin thioredoxin reductase]]
 +
*[[PcrH]]
 +
*[[Exportin]]
 +
*[[Exoenzyme]]
 +
*[[Epoxide hydrolase]]
 +
*[[Elongation factor]]
 +
*[[DNA damage-binding protein]]
 +
*[[DNA adenine methylase]]
 +
*[[Glucose 6-phosphate dehydrogenase]]
 +
*[[Diphthine synthase]]
 +
*[[Cytochrome f]]
 +
*[[Cullin]]
 +
*[[Cruzain]]
 +
*[[Complement C3]]
 +
*[[Formyl-CoA transferase]]
 +
*[[Ferric hydroxamate uptake receptor]]
 +
*[[Enoylpyruvate transferase]]
 +
*[[Enoyl-CoA hydratase]]
 +
*[[Cholesterol oxidase]]
 +
*[[Ceruloplasmin]]
 +
*[[Calpain]]
 +
*[[DXP reductoisomerase]]
 +
*[[Diphtheria toxin]]
 +
*[[Diphtheria toxin repressor]]
 +
*[[Diguanylate cyclase]]
 +
*[[Dehydroquinase]]
 +
*[[Dehaloperoxidase]]
 +
*[[Death-associated protein kinase]]
 +
*[[D-aminoacylase]]
 +
*[[Cytochrome c peroxidase]]
 +
*[[Cytochrome b5]]
 +
*[[Cyclohydrolase]]
 +
*[[Cocaine esterase]]
 +
*[[CotA laccase]]
 +
*[[Colicin I receptor]]
 +
*[[Choline O-acetyltransferase]]
 +
*[[Choline kinase]]
 +
*[[5'-deoxy-5'-methylthioadenosine phosphorylase]]
 +
*[[CD4]]
 +
*[[Casein kinase]]
 +
*[[Nitrile hydratase]]
 +
*[[UDP-3-O-acyl-N-acetylglucosamine deacetylase]]
 +
*[[Chitinase-3-like protein]]
 +
*[[Insulin-like growth factor receptor]]
 +
*[[Ribose-binding protein]]
 +
*[[Nitrite reductase]]
 +
*[[DNA methyltransferase]]
 +
*[[Pre-mRNA-splicing factor]]
 +
*[[Carboxylesterase]]
 +
*[[Ankyrin]]
 +
*[[Acetylcholinesterase with DFP]]
 +
*[[IFG/DG-Cerezyme]]
 +
*[[C-terminal portion of human eIF4GI]]
 +
*[[Death Associated Protein 5]]
 +
*[[Acetylcholinesterase complexed with N-9-(1',2',3',4'-tetrahydroacridinyl)-1,8-diaminooctane]]
 +
*[[Torpedo californica acetylcholinesterase with alkylene-linked tacrine dimer (5 carbon linker)]]
 +
*[[Thioredoxin Glutathione Reductase]]
 +
*[[Journal:PMC:1]]

Current revision

Dr. Alexander Berchansky, Ph.D., Israel Structural Proteomics Center, Weizmann Institute of Science

My interesting pages:

CRISPR-Cas (under development):

Classification according to the Wikipedia page CRISPR [1] with additions

CRISPR Class 1 uses a complex of multiple Cas proteins

CRISPR type I (Cas3)

CRISPR type I-A (Cascade) - see CRISPR subtype I-A

CRISPR type I-B (Cascade) - see CRISPR subtype I-B

CRISPR type I-C (Cascade) - see CRISPR subtype I-C

CRISPR type I-D (Cas10d)

CRISPR type I-E (Cascade) - see CRISPR subtype I-E

CRISPR type I-F (Csy1, Csy2, Csy3) - see CRISPR subtype I-F

CRISPR type I-U (GSU0054)

CRISPR type III (Cas10)

CRISPR type III-A (Csm complex) - see CRISPR subtype III-A (Csm complex)

CRISPR type III-B (Cmr complex)

CRISPR type III-C (Cas10 or Csx11)

CRISPR type III-D (Csx10)

CRISPR type Orphan

CRISPR type IV (Csf1)

CRISPR type IV-A

CRISPR type IV-B

CRISPR Class 2 uses a single large Cas protein

CRISPR type II-A - see CRISPR-Cas9

CRISPR type II-B (Cas4)

CRISPR type II-C

CRISPR type V (Cpf1, C2c1, C2c3) - see CRISPR type V

CRISPR type VI (Cas13a (previously known as C2c2), Cas13b, Cas13c, Cas13d) - see CRISPR type VI

Proteopedia Page Contributors and Editors (what is this?)

Alexander Berchansky, Eran Hodis

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